RetrogeneDB ID: | retro_ocun_381 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:96153245..96153525(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000003613 | ||
Aliases: | None | ||
Description: | Ubiquitin [Source:UniProtKB/Swiss-Prot;Acc:P62975] |
Percent Identity: | 70.53 % |
Parental protein coverage: | 60.26 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKK-KSYTTPKKNKHKRKKVKLAVLKYYKVDE |
RLIFA.KQLEDG.TLS..NIQKEST..LVL.L..G..K.K..KSYTTPKKN..KRKKVKL..LKYYKVD. | |
Retrocopy | RLIFAVKQLEDG*TLSNNNIQKESTVCLVLSLC-GSAKKKD>KSYTTPKKNILKRKKVKLVILKYYKVDK |
Parental | NGKISRLRRECPSDECGAGVFMASH |
NGKISRL....P.D.C.A..FMASH | |
Retrocopy | NGKISRLCQAYPLDACSARMFMASH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 147 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 235 .25 RPM |
SRP017611_liver | 0 .00 RPM | 62 .66 RPM |