RetrogeneDB ID: | retro_mdom_1367 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 4:161412763..161413217(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000001819 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.79 % |
Parental protein coverage: | 84.24 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGNSIPPDQQRLIF-AGKQLEDGRTLSDYNIQKESTLHLV |
FV..LTGKTIT.EV..S..IE.V..K.QDKEG..IPP...RL.F.A.KQLEDGRTLS.YNIQKESTLHL. | |
Retrocopy | FVTSLTGKTITCEVKQSNNIEKVRSKTQDKEG--IPPNPLRLLF>ACKQLEDGRTLSEYNIQKESTLHLI |
Parental | LRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHY |
L.L.GGAKK.KKKSY.TPKK.K.K.K..KLA.LK.Y.VDE..KIS.LR..CPSDECGA..FMASHFDRH. | |
Retrocopy | LSLQGGAKK-KKKSYSTPKKSKFKGKG-KLAALKFYEVDEKIKISHLR*ICPSDECGAACFMASHFDRHD |
Parental | CGKCCLTYCFNKPEDK |
.GKCCLT.CFNKPE.K | |
Retrocopy | HGKCCLTHCFNKPEEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 531 .86 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 420 .17 RPM |