Parental gene:

RPS27A, ENSAMEG00000004017

Aliases:None
Description:None
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL192376.1:2293922..2296203(-)


>ENSAMEG00000004017
ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATTACTCTCGAGGTTGAACCCTCGGATACGATAGAAAATGTAAA
GGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGAC
GTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTGCTAAGAAAAGG
AAGAAGAAGTCTTATACCACTCCCAAGAAGAATAAGCATAAGAGAAAGAAGGTTAAACTGGCCGTCCTGAAATACTATAA
GGTGGATGAGAATGGCAAAATCAGTCGCCTTCGTCGGGAGTGCCCTTCAGATGAATGTGGAGCTGGAGTTTTTATGGCTA
GCCACTTCGACAGACATTATTGTGGCAAATGTTGTCTGACCTATTGCTTCAACAAGCCAGAAGACAAGTAA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000015473 possible_ortholog 6 retrogenes
Canis familiaris ENSCAFG00000023471 possible_ortholog 3 retrogenes
Callithrix jacchus ENSCJAG00000010052 possible_ortholog 5 retrogenes
Cavia porcellus ENSCPOG00000005819 possible_ortholog 7 retrogenes
Dasypus novemcinctus ENSDNOG00000004813 possible_ortholog 12 retrogenes
Dipodomys ordii ENSDORG00000006291 possible_ortholog 11 retrogenes
Equus caballus ENSECAG00000018773 possible_ortholog 3 retrogenes
Erinaceus europaeus ENSEEUG00000002329 possible_ortholog 9 retrogenes
Felis catus ENSFCAG00000023939 ortholog_one2one 1 retrogene
Homo sapiens ENSG00000143947 ortholog_one2one 10 retrogenes
Gorilla gorilla ENSGGOG00000007678 ortholog_one2one 9 retrogenes
Loxodonta africana ENSLAFG00000023133 possible_ortholog 2 retrogenes
Macropus eugenii ENSMEUG00000008917 ortholog_one2many 13 retrogenes
Myotis lucifugus ENSMLUG00000017064 possible_ortholog 10 retrogenes
Myotis lucifugus ENSMLUG00000029449 possible_ortholog 1 retrogene
Macaca mulatta ENSMMUG00000015563 ortholog_one2one 8 retrogenes
Monodelphis domestica ENSMODG00000001819 possible_ortholog 3 retrogenes
Mustela putorius furo ENSMPUG00000010468 ortholog_one2one 6 retrogenes
Mus musculus ENSMUSG00000020460 possible_ortholog 19 retrogenes
Oryctolagus cuniculus ENSOCUG00000003613 possible_ortholog 10 retrogenes
Ochotona princeps ENSOPRG00000010469 possible_ortholog 13 retrogenes
Pongo abelii ENSPPYG00000025871 possible_ortholog 1 retrogene
Pan troglodytes ENSPTRG00000011928 possible_ortholog 1 retrogene
Pteropus vampyrus ENSPVAG00000016471 possible_ortholog 3 retrogenes
Rattus norvegicus ENSRNOG00000004426 possible_ortholog 2 retrogenes
Sus scrofa ENSSSCG00000022357 ortholog_one2one 1 retrogene
Ictidomys tridecemlineatus ENSSTOG00000009566 possible_ortholog 5 retrogenes
Tupaia belangeri ENSTBEG00000004626 possible_ortholog 95 retrogenes
retro_tbel_1019, retro_tbel_1022, retro_tbel_1057, retro_tbel_1058, retro_tbel_106, retro_tbel_1081, retro_tbel_1086, retro_tbel_1090, retro_tbel_1134, retro_tbel_1255, retro_tbel_1385, retro_tbel_1403, retro_tbel_1459, retro_tbel_1493, retro_tbel_1565, retro_tbel_1566, retro_tbel_157, retro_tbel_1584, retro_tbel_1606, retro_tbel_1623, retro_tbel_1673, retro_tbel_1678, retro_tbel_1760, retro_tbel_1825, retro_tbel_1863, retro_tbel_1902, retro_tbel_1946, retro_tbel_1952, retro_tbel_2067, retro_tbel_2119, retro_tbel_2122, retro_tbel_2123, retro_tbel_2238, retro_tbel_2354, retro_tbel_2408, retro_tbel_2605, retro_tbel_2671, retro_tbel_2739, retro_tbel_283, retro_tbel_2913, retro_tbel_2939, retro_tbel_2952, retro_tbel_3056, retro_tbel_3119, retro_tbel_3120, retro_tbel_3125, retro_tbel_3180, retro_tbel_3183, retro_tbel_3213, retro_tbel_3258, retro_tbel_3260, retro_tbel_3283, retro_tbel_3389, retro_tbel_3446, retro_tbel_3480, retro_tbel_3481, retro_tbel_3505, retro_tbel_3576, retro_tbel_3595, retro_tbel_3621, retro_tbel_3649, retro_tbel_3665, retro_tbel_3831, retro_tbel_3839, retro_tbel_3840, retro_tbel_3874, retro_tbel_3920, retro_tbel_396, retro_tbel_3977, retro_tbel_4021, retro_tbel_4053, retro_tbel_4133, retro_tbel_4149, retro_tbel_4224, retro_tbel_426, retro_tbel_4284, retro_tbel_4305, retro_tbel_4313, retro_tbel_4474, retro_tbel_4484, retro_tbel_4498, retro_tbel_4499, retro_tbel_4502, retro_tbel_4504, retro_tbel_4547, retro_tbel_4554, retro_tbel_4565, retro_tbel_4628, retro_tbel_703, retro_tbel_709, retro_tbel_763, retro_tbel_843, retro_tbel_866, retro_tbel_871, retro_tbel_874,
Tarsius syrichta ENSTSYG00000000845 possible_ortholog 14 retrogenes
Tursiops truncatus ENSTTRG00000013947 ortholog_one2one 5 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_amel_175 66.33 60.90
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2. retro_amel_598 75.00 100.00
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3. retro_amel_661 80.56 91.67
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4. retro_amel_844 73.33 66.03
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5. retro_amel_1565 61.01 98.08
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Download FASTA sequences of all ENSAMEG00000004017 retrocopies