RetrogeneDB ID: | retro_mmul_1198 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 15:81499763..81500213(-) | ||
Located in intron of: | ENSMMUG00000012503 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.251 | ||
Ensembl ID: | ENSMMUG00000015563 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S27a [Source:RefSeq peptide;Acc:NP_001180515] |
Percent Identity: | 76.97 % |
Parental protein coverage: | 97.44 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR |
.KTL.GKTITLE.EP.DT.EN.K.KI.DK.GI..DQQR.I..GK.LE.G..LS.YNIQKESTLHLVLRL. | |
Retrocopy | LKTLMGKTITLEFEPLDTTENAKSKI*DKTGISTDQQRPICVGKKLEGGCALSGYNIQKESTLHLVLRLH |
Parental | GGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKC |
.GAKKR.KKSYTTPKKNKHK..KVKLAVLKYY..DENGKIS.L..ECPSDEC.AG.FMASHF.RHYC.K. | |
Retrocopy | SGAKKR-KKSYTTPKKNKHKKRKVKLAVLKYYRLDENGKISCLHQECPSDECIAGDFMASHFNRHYCSK- |
Parental | CLTYCFNKPEDK |
CL.YCFNKPEDK | |
Retrocopy | CLDYCFNKPEDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 58 .49 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 119 .31 RPM |
SRP007412_cerebellum | 0 .00 RPM | 65 .74 RPM |
SRP007412_heart | 0 .00 RPM | 89 .09 RPM |
SRP007412_kidney | 0 .00 RPM | 84 .15 RPM |
SRP007412_liver | 0 .00 RPM | 98 .84 RPM |
SRP007412_testis | 0 .00 RPM | 45 .01 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4272 |
Gorilla gorilla | retro_ggor_2858 |