RetrogeneDB ID: | retro_ocun_1259 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 4:67450529..67450947(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000003613 | ||
Aliases: | None | ||
Description: | Ubiquitin [Source:UniProtKB/Swiss-Prot;Acc:P62975] |
Percent Identity: | 60.54 % |
Parental protein coverage: | 91.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | TLEVEP-SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI-QKESTLHLVLRLRGGAKKRK |
.LEV.P..DT.EN...KIQ.KE.IPPDQQ..IFA.K.L..G.TL.DY.I..KE.TL.LVL.L.GGA.KR. | |
Retrocopy | SLEVKP<LDTSENITTKIQKKEAIPPDQQGAIFASKLLKGGCTLPDYKI>EKEFTLCLVLKLHGGAEKRR |
Parental | KKSYTTPKKNKHKRKKV-KLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCG-KCCLTYC |
K.S.TTP.KN.HKRKK...LAVL....VDE.GKIS.L..ECPS..C.AG.F.A.H.....CG..C.LTY. | |
Retrocopy | KPS-TTPGKNEHKRKKM<ELAVLRHHEVDEKGKISHLNAECPSAGCDAGNFRALH--KTVCG<QCGLTYY |
Parental | FNKPEDK |
FNKPE.K | |
Retrocopy | FNKPEEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 147 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 235 .25 RPM |
SRP017611_liver | 0 .00 RPM | 62 .66 RPM |