RetrogeneDB ID: | retro_ggor_203 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 17:10570586..10571054(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000026301 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS27A | ||
Ensembl ID: | ENSGGOG00000007678 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.38 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV |
MQIFVKTLTGKT.TL.VEP.DTIENVKAKIQDKEGIPPDQQR.IFAGKQLEDG.TLS.YNIQKESTLH.V | |
Retrocopy | MQIFVKTLTGKTTTLKVEPLDTIENVKAKIQDKEGIPPDQQRPIFAGKQLEDGCTLSGYNIQKESTLHFV |
Parental | LRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHY |
LRLRGGAKKRKKKSYTTPKKNK.KRKKVKLAVLKYYKV.ENGKIS.LRR.CPSDECG.GVF.ASHFDRHY | |
Retrocopy | LRLRGGAKKRKKKSYTTPKKNKRKRKKVKLAVLKYYKVAENGKISCLRRGCPSDECGVGVFTASHFDRHY |
Parental | CGKCCLTYCFNKPEDK |
CGK.CLTYC.NKPEDK | |
Retrocopy | CGKYCLTYCVNKPEDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 105 .69 RPM |
SRP007412_cerebellum | 0 .04 RPM | 133 .52 RPM |
SRP007412_heart | 0 .03 RPM | 62 .04 RPM |
SRP007412_kidney | 0 .00 RPM | 336 .07 RPM |
SRP007412_liver | 0 .16 RPM | 334 .68 RPM |
SRP007412_testis | 0 .10 RPM | 172 .39 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1715 |