RetrogeneDB ID: | retro_ocun_1339 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 7:2560851..2561318(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000012958 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000003613 | ||
Aliases: | None | ||
Description: | Ubiquitin [Source:UniProtKB/Swiss-Prot;Acc:P62975] |
Percent Identity: | 98.09 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL |
MQIFVKTLTG.KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG.TLSDYNIQKESTLHL | |
Retrocopy | MQIFVKTLTG<KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGWTLSDYNIQKESTLHL |
Parental | VLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRH |
VLRL.GGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRH | |
Retrocopy | VLRLHGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRH |
Parental | YCGKCCLTYCFNKPEDK |
YCGKCCLTYCFNKPEDK | |
Retrocopy | YCGKCCLTYCFNKPEDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 4 .91 RPM | 147 .19 RPM |
SRP017611_kidney | 7 .60 RPM | 235 .25 RPM |
SRP017611_liver | 2 .24 RPM | 62 .66 RPM |