RetrogeneDB ID: | retro_rnor_117 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:37347774..37348239(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000032132 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps27a | ||
Ensembl ID: | ENSRNOG00000004426 | ||
Aliases: | None | ||
Description: | Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a [Source:UniProtKB/Swiss-Prot;Acc:P62982] |
Percent Identity: | 92.41 % |
Parental protein coverage: | 92.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRK |
TI.LEVEPSDTIENVKAKIQD.EGIPPDQQRL.FAGKQLEDGRTLSDYNIQKES.LHLVLRLR.GAKKR. | |
Retrocopy | TIMLEVEPSDTIENVKAKIQDEEGIPPDQQRLVFAGKQLEDGRTLSDYNIQKESMLHLVLRLRSGAKKR- |
Parental | KKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFN |
KKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDE.GAGV..G.HFDRHYCGK.CLTYCFN | |
Retrocopy | KKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDERGAGVVTGRHFDRHYCGKRCLTYCFN |
Parental | KPEDK |
KPEDK | |
Retrocopy | KPEDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 61 .97 RPM |
SRP017611_kidney | 0 .00 RPM | 74 .95 RPM |
SRP017611_liver | 0 .07 RPM | 58 .90 RPM |