RetrogeneDB ID: | retro_mmul_282 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 17:64295385..64295853(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000004807 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.251 | ||
Ensembl ID: | ENSMMUG00000015563 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S27a [Source:RefSeq peptide;Acc:NP_001180515] |
Percent Identity: | 86.93 % |
Parental protein coverage: | 98.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL |
F..T..G..ITL.VEPSDTIENVKA.IQDKEGIPP.QQR.IFAGKQLED..TLSDYNIQKESTLHLVLRL | |
Retrocopy | FSPTSGGAAITLHVEPSDTIENVKAEIQDKEGIPPAQQRGIFAGKQLEDAWTLSDYNIQKESTLHLVLRL |
Parental | RGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGK |
RGGAKK.KKKSYTTPKKNKHKRKKVKLAVLK.Y.V.ENGKISRLR.ECPSDECGAGVFMASHFDRHYCGK | |
Retrocopy | RGGAKKKKKKSYTTPKKNKHKRKKVKLAVLKCYQVGENGKISRLRQECPSDECGAGVFMASHFDRHYCGK |
Parental | CCLTYCFNKPEDK |
.CLTY.FNKPE.K | |
Retrocopy | -CLTYFFNKPEEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .34 RPM | 58 .49 RPM |
SRP007412_brain_prefrontal_cortex | 0 .24 RPM | 119 .31 RPM |
SRP007412_cerebellum | 0 .00 RPM | 65 .74 RPM |
SRP007412_heart | 0 .00 RPM | 89 .09 RPM |
SRP007412_kidney | 0 .00 RPM | 84 .15 RPM |
SRP007412_liver | 0 .04 RPM | 98 .84 RPM |
SRP007412_testis | 0 .04 RPM | 45 .01 RPM |