RetrogeneDB ID: | retro_cjac_344 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 11:28400795..28401263(+) | ||
Located in intron of: | ENSCJAG00000009451 | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000022121 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000010052 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.72 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV |
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV | |
Retrocopy | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV |
Parental | LRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHY |
LRLRGGAKKRKK.SYTTPKKNKHKRKKVKLAVLKYYKVDENGKIS.LRRECPSDECGAGVFMASHFDRHY | |
Retrocopy | LRLRGGAKKRKK-SYTTPKKNKHKRKKVKLAVLKYYKVDENGKISCLRRECPSDECGAGVFMASHFDRHY |
Parental | CGKCCLTYCFNKPEDK |
CGKCCLTYCFNKPEDK | |
Retrocopy | CGKCCLTYCFNKPEDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .20 RPM | 115 .31 RPM |
SRP051959_heart | 0 .49 RPM | 124 .24 RPM |
SRP051959_kidney | 0 .62 RPM | 127 .79 RPM |
SRP051959_liver | 0 .24 RPM | 134 .77 RPM |
SRP051959_lung | 0 .63 RPM | 117 .01 RPM |
SRP051959_lymph_node | 0 .73 RPM | 211 .02 RPM |
SRP051959_skeletal_muscle | 0 .63 RPM | 129 .83 RPM |
SRP051959_spleen | 0 .55 RPM | 182 .50 RPM |