RetrogeneDB ID: | retro_pabe_2962 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 6:70518212..70518496(-) | ||
Located in intron of: | ENSPPYG00000016758 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37 | ||
Ensembl ID: | ENSPPYG00000015422 | ||
Aliases: | None | ||
Description: | ribosomal protein L37 [Source:HGNC Symbol;Acc:10347] |
Percent Identity: | 73.96 % |
Parental protein coverage: | 97.94 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | KGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGY-PAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVY |
KGT.SF.K.R.KTHTLC..CGSKA.H.QKS.CGKCG..PAKRKRK.N.SAKA.R.N...TGR.RHL.IVY | |
Retrocopy | KGTPSFEKCRSKTHTLCHHCGSKARHFQKSSCGKCGH<PAKRKRKCN*SAKA*R*NNARTGRVRHLNIVY |
Parental | RRFRHGFREGTTPKPKRAAVAASSSS |
RRFR.GF.EGTT.KPKRAAV.ASS.S | |
Retrocopy | RRFRSGF*EGTTSKPKRAAVVASSLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 62 .42 RPM |
SRP007412_cerebellum | 0 .00 RPM | 60 .68 RPM |
SRP007412_heart | 0 .00 RPM | 63 .73 RPM |
SRP007412_kidney | 0 .00 RPM | 73 .02 RPM |
SRP007412_liver | 0 .00 RPM | 81 .68 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3610 |
Pan troglodytes | retro_ptro_2440 |
Gorilla gorilla | retro_ggor_2436 |