RetrogeneDB ID: | retro_ggor_2930 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | X:73180050..73180569(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL5A | ||
Ensembl ID: | ENSGGOG00000002066 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.15 % |
Parental protein coverage: | 98.32 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | ILFTRIWRLFNHQEHKVIIVGLDNAGKTTI-LYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQE |
ILFTRIWRLFNHQEHKVIIV.LDN.GKTT..L.QFSMNEVVHTS...GSNVEEIVINNTRFL.WDIGGQE | |
Retrocopy | ILFTRIWRLFNHQEHKVIIVKLDNSGKTTT<L*QFSMNEVVHTSLVVGSNVEEIVINNTRFLIWDIGGQE |
Parental | SLRSSWNTY-YTNTEFVIVVVDSTD-RERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEIS |
SLRSSWNTY.Y.NTEF..V.V..T..RERISVTREE.YKMLAHEDLRK..LLIFANKQDVKECMTVAEIS | |
Retrocopy | SLRSSWNTY<YINTEF--VIVVDTT<RERISVTREERYKMLAHEDLRKGALLIFANKQDVKECMTVAEIS |
Parental | QFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI |
QFLKLTSIKDHQWH.QACCALTGEGLCQGLEWMMSRL.I | |
Retrocopy | QFLKLTSIKDHQWHTQACCALTGEGLCQGLEWMMSRLQI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 3 .88 RPM |
SRP007412_cerebellum | 0 .00 RPM | 7 .45 RPM |
SRP007412_heart | 0 .00 RPM | 1 .34 RPM |
SRP007412_kidney | 0 .04 RPM | 13 .70 RPM |
SRP007412_liver | 0 .00 RPM | 7 .57 RPM |
SRP007412_testis | 0 .00 RPM | 6 .63 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4715 |
Pan troglodytes | retro_ptro_3134 |