RetrogeneDB ID: | retro_mmus_2232 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 3:27308405..27308675(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Arl5a | ||
Ensembl ID: | ENSMUSG00000036093 | ||
Aliases: | Arl5a, 2410015N24Rik, 2810410P22Rik, AA408731, AW610751, Arl5, T25534 | ||
Description: | ADP-ribosylation factor-like 5A [Source:MGI Symbol;Acc:MGI:1922673] |
Percent Identity: | 64.52 % |
Parental protein coverage: | 51.96 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | GGQESLRPSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAE |
GGQESL..S.NT.YTNTEFV..V.D.T.R......R.ELYK..AH.D....GLL..ANKQDVKEC.TVAE | |
Retrocopy | GGQESLLSSENTPYTNTEFV-PVADGTERDFCN--RDELYKI*AHKDIMETGLLAHANKQDVKECVTVAE |
Parental | ISQFLKLTSIKDHQWHIQACCAL |
.SQF.K.TSI.D.QW.IQACC.L | |
Retrocopy | KSQFFKTTSIEDRQWYIQACCIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 61 .44 RPM |
SRP007412_cerebellum | 0 .00 RPM | 57 .97 RPM |
SRP007412_heart | 0 .00 RPM | 27 .11 RPM |
SRP007412_kidney | 0 .02 RPM | 47 .95 RPM |
SRP007412_liver | 0 .00 RPM | 72 .80 RPM |
SRP007412_testis | 0 .00 RPM | 3 .20 RPM |