RetrogeneDB ID: | retro_dnov_2268 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_59998:6363..6735(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDNOG00000025517 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL5A | ||
Ensembl ID: | ENSDNOG00000013331 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 5A [Source:HGNC Symbol;Acc:696] |
Percent Identity: | 58.46 % |
Parental protein coverage: | 70.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MGILFTRIWRLFNHQEHKVIIVGLDNAG-KTTILXXXSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGG |
.G.LF...W.LF..QEHKVI..GLDNAG..TTIL...SM.EV........S.V.EIVV.NT.FL.W..GG | |
Retrocopy | LGLLFSKLWSLFCNQEHKVIVMGLDNAG<VTTILYQFSMKEVFRLLQP-ASSVGEIVVKNTHFLRWVVGG |
Parental | QESLRSSWNTYYTNTEFVIVVVDSTDRER-ISVTREELYKMLAHEDLRK-AGLLIFANKQ |
Q.SLRSSWNT.Y.NTEF.I..VDSTDRER......EEL...LA.EDL.K.A..L.FAN.. | |
Retrocopy | QKSLRSSWNTCYSNTEF-IILVDSTDRER<LAIAKEELHRLLAAEDLQK<AAVLVFANRR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 15 .56 RPM |
SRP012922_cerebellum | 0 .14 RPM | 6 .60 RPM |
SRP012922_heart | 0 .00 RPM | 5 .34 RPM |
SRP012922_kidney | 0 .00 RPM | 6 .57 RPM |
SRP012922_liver | 0 .00 RPM | 4 .18 RPM |
SRP012922_lung | 0 .00 RPM | 10 .39 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 10 .73 RPM |
SRP012922_spleen | 0 .00 RPM | 13 .05 RPM |