RetrogeneDB ID: | retro_dnov_1953 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_38476:13852..14343(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL5A | ||
Ensembl ID: | ENSDNOG00000013331 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 5A [Source:HGNC Symbol;Acc:696] |
Percent Identity: | 93.94 % |
Parental protein coverage: | 91.62 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | EHKVIIVGLDNAGKTTILXXXSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRSSWNTYYTNTE |
EHKVIIVGLDNAGK.TIL...SMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESL.SSWNTYYTNTE | |
Retrocopy | EHKVIIVGLDNAGKITILYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLCSSWNTYYTNTE |
Parental | FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQ |
FVIVVVDSTDRERISV.REELYKML.HEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHI. | |
Retrocopy | FVIVVVDSTDRERISVSREELYKMLVHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHI* |
Parental | ACCALTGEGLCQ-GLEWMMSRLKIR |
ACCALT.EGLCQ.GLEWMMSRLKIR | |
Retrocopy | ACCALTDEGLCQ<GLEWMMSRLKIR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 2 .53 RPM | 15 .56 RPM |
SRP012922_cerebellum | 1 .65 RPM | 6 .60 RPM |
SRP012922_heart | 0 .70 RPM | 5 .34 RPM |
SRP012922_kidney | 1 .37 RPM | 6 .57 RPM |
SRP012922_liver | 0 .93 RPM | 4 .18 RPM |
SRP012922_lung | 2 .60 RPM | 10 .39 RPM |
SRP012922_quadricep_muscle | 1 .73 RPM | 10 .73 RPM |
SRP012922_spleen | 2 .29 RPM | 13 .05 RPM |