RetrogeneDB ID: | retro_fcat_65 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:100625311..100625833(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000006785 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000014742 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.38 % |
Parental protein coverage: | 97.21 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQ |
MGILFTR.WRLF.HQ.HKVI..GLDNAGKTT.LYQ.SMNEVVH.SPTIGSNVEEIVIN.T.FLMW.IGGQ | |
Retrocopy | MGILFTRKWRLFDHQGHKVIL-GLDNAGKTTVLYQVSMNEVVHASPTIGSNVEEIVINHTCFLMWAIGGQ |
Parental | ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQ |
ESLRSSWNTY.TNTEFVIVVVD.TDRERISVTREELYKMLAHEDLRKAGLLIFA.KQDVKECMTVAEISQ | |
Retrocopy | ESLRSSWNTYCTNTEFVIVVVDGTDRERISVTREELYKMLAHEDLRKAGLLIFASKQDVKECMTVAEISQ |
Parental | FLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS |
FLKLTSIKDHQWHIQAC.ALTGEGLCQGLEWMMS | |
Retrocopy | FLKLTSIKDHQWHIQACYALTGEGLCQGLEWMMS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 17 .22 RPM |
SRP017611_kidney | 0 .00 RPM | 5 .67 RPM |
SRP017611_liver | 0 .00 RPM | 4 .14 RPM |