Parental gene:

ARL5A, ENSEEUG00000009350

Aliases:None
Description:ADP-ribosylation factor-like 5A [Source:HGNC Symbol;Acc:696]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:scaffold_339247:8421..20090(+)


>ENSEEUG00000009350
CACAAGGTTATCATTGTTGGGCTGGATAACGCAGGGAAAACTACCATCCTTTACCAGTTTTCTATGAATGAAGTTGTACA
CACATCCCCAACAATAGGAAGTAATGTAGAAGAGATAGTGGTTAATAATACACGTTTCCTGATGTGGGATATTGGTGGCC
AAGAATCTCTTCGTTCTTCCTGGAACACTTACTATACTAACACAGAGTTTGTAATCATTGTTGTAGATAGTACGGACAGA
GAAAGAATTTCTGTAACTAGAGAAGAACTCTATAAAATGTTAGCCCATGAGGACCTAAGGAAAGCCGGATTATTGATTTT
TGCCAATAAGCAAGATGTTAAGGAATGCATGACTGTAGCTGAGATCTCACAGTTTTTAAAGCTGACATCTATTAAAGACC
ACCAATGGCATATACAGGCATGCTGTGCTCTTACTGGTGAAGGAGTATGCGAAGGACTTGGAGGGATGATGGCCCGGCTG
GAAAGCAAATGA

Library Parental gene expression (RPM)
SRP017611_brain 11 .28 RPM
SRP017611_kidney 16 .13 RPM
SRP017611_liver 19 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000005062 ortholog_one2one 25 retrogenes
retro_chof_1109, retro_chof_1132, retro_chof_1205, retro_chof_1218, retro_chof_1407, retro_chof_1414, retro_chof_1443, retro_chof_1573, retro_chof_1712, retro_chof_1953, retro_chof_206, retro_chof_2081, retro_chof_2131, retro_chof_2142, retro_chof_2433, retro_chof_2464, retro_chof_2470, retro_chof_2713, retro_chof_373, retro_chof_547, retro_chof_836, retro_chof_857, retro_chof_865, retro_chof_972, retro_chof_98,
Callithrix jacchus ENSCJAG00000003311 possible_ortholog 9 retrogenes
retro_cjac_1054, retro_cjac_1111, retro_cjac_1255, retro_cjac_1921, retro_cjac_2949, retro_cjac_3920, retro_cjac_4131, retro_cjac_4175, retro_cjac_4211,
Dasypus novemcinctus ENSDNOG00000013331 ortholog_one2one 16 retrogenes
retro_dnov_105, retro_dnov_1165, retro_dnov_1244, retro_dnov_1953, retro_dnov_2159, retro_dnov_226, retro_dnov_2265, retro_dnov_2268, retro_dnov_2344, retro_dnov_2394, retro_dnov_563, retro_dnov_671, retro_dnov_713, retro_dnov_811, retro_dnov_818, retro_dnov_881,
Equus caballus ENSECAG00000023672 ortholog_one2one 1 retrogene
retro_ecab_1087,
Felis catus ENSFCAG00000014742 ortholog_one2many 2 retrogenes
retro_fcat_569, retro_fcat_65,
Gorilla gorilla ENSGGOG00000002066 ortholog_one2one 5 retrogenes
retro_ggor_1131, retro_ggor_1594, retro_ggor_2930, retro_ggor_2971, retro_ggor_3056,
Loxodonta africana ENSLAFG00000032104 ortholog_one2one 4 retrogenes
retro_lafr_1178, retro_lafr_1228, retro_lafr_1244, retro_lafr_599,
Monodelphis domestica ENSMODG00000003978 ortholog_one2many 1 retrogene
retro_mdom_75,
Mustela putorius furo ENSMPUG00000000396 ortholog_one2one 2 retrogenes
retro_mputfur_1477, retro_mputfur_352,
Mus musculus ENSMUSG00000036093 ortholog_one2one 1 retrogene
retro_mmus_2232,
Ictidomys tridecemlineatus ENSSTOG00000016326 ortholog_one2one 1 retrogene
retro_itri_62,
Tupaia belangeri ENSTBEG00000011511 ortholog_one2one 8 retrogenes
retro_tbel_1173, retro_tbel_1540, retro_tbel_3202, retro_tbel_3464, retro_tbel_3681, retro_tbel_3835, retro_tbel_4207, retro_tbel_4665,
Tursiops truncatus ENSTTRG00000015564 ortholog_one2one 2 retrogenes
retro_ttru_1008, retro_ttru_1843,
Vicugna pacos ENSVPAG00000002172 ortholog_one2one 2 retrogenes
retro_vpac_318, retro_vpac_399,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_240 89.51 98.77
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2. retro_eeur_642 83.91 53.37
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3. retro_eeur_699 92.16 61.96
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Download FASTA sequences of all ENSEEUG00000009350 retrocopies