RetrogeneDB ID: | retro_dnov_671 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_7498:62124..62495(+) | ||
Located in intron of: | ENSDNOG00000015535 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL5A | ||
Ensembl ID: | ENSDNOG00000013331 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 5A [Source:HGNC Symbol;Acc:696] |
Percent Identity: | 60.47 % |
Parental protein coverage: | 70.39 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | VEEIVVNNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDR-ERISVTREELYKMLAHEDLRKAGL |
VE....NNT.FL.WDIG.QESL....N...TNT..V..VV....R..R.SV.RE..Y..LA.ED.RK..L | |
Retrocopy | VEGSLFNNTHFLLWDIGDQESLQFF*NS*CTNT*LV-IVVVYSVR<NRVSVSRE-VYNILAQEDIRKTSL |
Parental | LI-FANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCAL-TGEGLCQGLEWMMSRLK |
.I..ANKQDVKECMTVA.I...LKLTSIK.HQWHIQA.CAL.T.E.LC.G.EWM.S.L. | |
Retrocopy | PI>VANKQDVKECMTVAKIY*VLKLTSIKIHQWHIQARCAL<TIEALCHGNEWMTSWLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 15 .56 RPM |
SRP012922_cerebellum | 0 .00 RPM | 6 .60 RPM |
SRP012922_heart | 0 .00 RPM | 5 .34 RPM |
SRP012922_kidney | 0 .00 RPM | 6 .57 RPM |
SRP012922_liver | 0 .00 RPM | 4 .18 RPM |
SRP012922_lung | 0 .00 RPM | 10 .39 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 10 .73 RPM |
SRP012922_spleen | 0 .00 RPM | 13 .05 RPM |