RetrogeneDB ID: | retro_ptro_3134 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | X:75866521..75867043(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL5A | ||
Ensembl ID: | ENSPTRG00000012538 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.11 % |
Parental protein coverage: | 98.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | ILFTRIWRLFNHQEHKVIIVGLDNAGKTTI-LYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQE |
ILFTRIWRLFNHQEHKVIIV.LDN.GKTT..LYQFSMNEVVHTS...GSNVEEIVINNTRFL.WDIGGQE | |
Retrocopy | ILFTRIWRLFNHQEHKVIIVKLDNSGKTTT<LYQFSMNEVVHTSFVVGSNVEEIVINNTRFLIWDIGGQE |
Parental | SLRSSWNTY-YTNTEFVIVVVDSTD-RERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEIS |
SLRSSWNTY.Y.NTEF..V.V..T..RERISVTREE.YKML.HEDLRK..LLIFANKQDVK.CMT.AEIS | |
Retrocopy | SLRSSWNTY<YINTEF--VIVVDTT<RERISVTREERYKMLPHEDLRKGALLIFANKQDVKDCMTIAEIS |
Parental | QFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR |
QFLKLTSIKDHQWH.QACCALTGEGLCQGLEWMMSRL.IR | |
Retrocopy | QFLKLTSIKDHQWHTQACCALTGEGLCQGLEWMMSRLQIR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 10 .40 RPM |
SRP007412_cerebellum | 0 .00 RPM | 16 .81 RPM |
SRP007412_heart | 0 .00 RPM | 20 .72 RPM |
SRP007412_kidney | 0 .00 RPM | 21 .55 RPM |
SRP007412_liver | 0 .00 RPM | 7 .17 RPM |
SRP007412_testis | 0 .00 RPM | 8 .01 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4715 |
Gorilla gorilla | retro_ggor_2930 |