RetrogeneDB ID: | retro_dnov_811 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_109617:6383..6793(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL5A | ||
Ensembl ID: | ENSDNOG00000013331 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 5A [Source:HGNC Symbol;Acc:696] |
Percent Identity: | 66.91 % |
Parental protein coverage: | 77.09 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | EHKVIIVGLDNAGKTTILXXXSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRSSWNTYYTNTE |
E.KVI.VGLD.AGKTT.L....M.EVVHTSP.IGSN.EEIVV.NT.FL..DIGGQE.L.SSWNTYY.NTE | |
Retrocopy | ECKVIVVGLDSAGKTTVLNQFLMREVVHTSPSIGSNTEEIVVKNTHFLT*DIGGQEFLQSSWNTYY*NTE |
Parental | FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN-KQDVKECMTVAEISQFLKLTSIKDHQWH |
F.I.VVDS.DR.R......ELY.MLAHEDL.K...L.FAN..QD.K.CMT..EIS..L.L.SIKDH..H | |
Retrocopy | FIILVVDSIDRKRLAIIK-ELYRMLAHEDLLKVAVLTFAN<QQDMKGCMTAPEISKHLTLSSIKDHPRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 15 .56 RPM |
SRP012922_cerebellum | 0 .00 RPM | 6 .60 RPM |
SRP012922_heart | 0 .00 RPM | 5 .34 RPM |
SRP012922_kidney | 0 .00 RPM | 6 .57 RPM |
SRP012922_liver | 0 .00 RPM | 4 .18 RPM |
SRP012922_lung | 0 .00 RPM | 10 .39 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 10 .73 RPM |
SRP012922_spleen | 0 .00 RPM | 13 .05 RPM |