RetrogeneDB ID: | retro_vpac_318 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_747:18046..18579(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL5A | ||
Ensembl ID: | ENSVPAG00000002172 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 5A [Source:HGNC Symbol;Acc:696] |
Percent Identity: | 82.78 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQ |
MGILFTR.W.L.NHQ.HKVIIVGLDNAG.TTILYQFSM.EVVHT.PTIGS.VEE.VINN.RFLMWD..GQ | |
Retrocopy | MGILFTRVWKLLNHQQHKVIIVGLDNAGETTILYQFSMHEVVHTPPTIGSVVEETVINNARFLMWDVVGQ |
Parental | ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH-EDLRKAGLLIFANKQDVKECMTVAEIS |
ESLRSS.NTYYTNT.FV..VVD.TDRE.ISVTREELYKMLA..EDLRKAG.LIFANKQDVKECMTVAEIS | |
Retrocopy | ESLRSSCNTYYTNTGFV-MVVDRTDREGISVTREELYKMLAS<EDLRKAGVLIFANKQDVKECMTVAEIS |
Parental | QFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR |
QFL.L.SIKDHQ.HI.A..AL.G.G.CQGLEWMMS.LKIR | |
Retrocopy | QFLELMSIKDHQGHIHAGYALAGKGFCQGLEWMMSQLKIR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |