RetrogeneDB ID: | retro_dnov_1244 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_16858:5226..5521(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL5A | ||
Ensembl ID: | ENSDNOG00000013331 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 5A [Source:HGNC Symbol;Acc:696] |
Percent Identity: | 67.65 % |
Parental protein coverage: | 55.87 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD |
YYTNTEFVIVV.....RERISV.REEL.KMLAHEDLRK.G.LIFANKQD.K.C.TV.E.SQFLKL.S..D | |
Retrocopy | YYTNTEFVIVVRGQY-RERISVPREELCKMLAHEDLRKCGWLIFANKQDFKKCLTVVETSQFLKLISVRD |
Parental | HQWHIQACCALTG-EGLCQGLE-WMMSRLKIR |
H..HI.A.CALT...G.CQ....WM.S..K.R | |
Retrocopy | H*RHI*ANCALTA<KGMCQ*MD<WMTS*FKMR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 15 .56 RPM |
SRP012922_cerebellum | 0 .00 RPM | 6 .60 RPM |
SRP012922_heart | 0 .00 RPM | 5 .34 RPM |
SRP012922_kidney | 0 .00 RPM | 6 .57 RPM |
SRP012922_liver | 0 .00 RPM | 4 .18 RPM |
SRP012922_lung | 0 .00 RPM | 10 .39 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 10 .73 RPM |
SRP012922_spleen | 0 .00 RPM | 13 .05 RPM |