RetrogeneDB ID: | retro_dnov_105 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_1610:90349..90720(+) | ||
Located in intron of: | ENSDNOG00000005975 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL5A | ||
Ensembl ID: | ENSDNOG00000013331 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 5A [Source:HGNC Symbol;Acc:696] |
Percent Identity: | 78.57 % |
Parental protein coverage: | 69.27 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | GILFTRIWRLFNHQEHKVIIVGLDNAGKTTILXXXSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQE |
GILFT.IWRLF.HQE..VIIV.LDNAGKTTIL...SMNEV.HTS.T.GSNVE.IVV.NT..LMW..G.QE | |
Retrocopy | GILFTGIWRLFSHQEDNVIIVVLDNAGKTTILYQFSMNEVSHTSLTVGSNVEGIVV-NTHSLMWGFGDQE |
Parental | SLRSSWNTY-YTNTEFVIVVVDSTDRERIS-VTREELYKMLAHEDLRKAGLLIFAN |
SL.SSWNTY.YTNTEF.IV.VDSTDRERIS...REELYKML.HEDL.KAGLLIFAN | |
Retrocopy | SLHSSWNTY>YTNTEFLIVFVDSTDRERIS>LVREELYKMLVHEDLTKAGLLIFAN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 15 .56 RPM |
SRP012922_cerebellum | 0 .00 RPM | 6 .60 RPM |
SRP012922_heart | 0 .00 RPM | 5 .34 RPM |
SRP012922_kidney | 0 .00 RPM | 6 .57 RPM |
SRP012922_liver | 0 .00 RPM | 4 .18 RPM |
SRP012922_lung | 0 .00 RPM | 10 .39 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 10 .73 RPM |
SRP012922_spleen | 0 .00 RPM | 13 .05 RPM |