RetrogeneDB ID: | retro_ptro_784 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 12:100301687..100302474(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPTRG00000022025 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 86.04 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGP-HKLRECLPLIIFLRNRLKYALTGDEVKKICMQRF |
M...PKKHLK.VAAPKHWMLDKLT.VFAPRPST.P.HKLR.CL.LIIFLRNRLKYALTGDEVKKIC.QRF | |
Retrocopy | MTCDPKKHLKWVAAPKHWMLDKLTSVFAPRPSTSP<HKLRVCLSLIIFLRNRLKYALTGDEVKKICIQRF |
Parental | IKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHL |
IKIDGKVRTDITYPAGFMDVISIDKTGENF.LI.DTKGRFAVH.ITPEEAKYKLCKVRK.FVGTKGI..L | |
Retrocopy | IKIDGKVRTDITYPAGFMDVISIDKTGENFHLICDTKGRFAVHHITPEEAKYKLCKVRKTFVGTKGISRL |
Parental | VTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVIT-NRERHPGSFDVV |
VTHDARTI.YPDPLI.VN..IQID.ETGKITDF.KFDTGNLCMVTG.ANLGRIGVIT..RERHPGSFD.V | |
Retrocopy | VTHDARTIHYPDPLIRVNGIIQID*ETGKITDFTKFDTGNLCMVTGSANLGRIGVIT<HRERHPGSFDMV |
Parental | HVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG |
H.KDAN.N.FATRLSNIFVIG.GNK..IS...GKGI.LTI.EERDKRLAAKQSSG | |
Retrocopy | HMKDANSNRFATRLSNIFVIGRGNKL*ISFS*GKGIHLTIVEERDKRLAAKQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .07 RPM | 132 .82 RPM |
SRP007412_cerebellum | 0 .04 RPM | 129 .52 RPM |
SRP007412_heart | 0 .00 RPM | 90 .29 RPM |
SRP007412_kidney | 0 .08 RPM | 231 .18 RPM |
SRP007412_liver | 0 .20 RPM | 130 .28 RPM |
SRP007412_testis | 0 .00 RPM | 9 .06 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1151 |
Gorilla gorilla | retro_ggor_895 |
Pongo abelii | retro_pabe_954 |