RetrogeneDB ID: | retro_hsap_1151 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 12:100402829..100403616(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000214203 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSG00000198034 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 86.79 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGP-HKLRECLPLIIFLRNRLKYALTGDEVKKICMQRF |
M...PKKHLK.VAAPKHWMLDKLT.VF.PRPSTGP.HKLR.CL.LIIFLRNRLKYALTGDEVKKIC.Q.F | |
Retrocopy | MTCDPKKHLKWVAAPKHWMLDKLTSVFDPRPSTGP<HKLRVCLSLIIFLRNRLKYALTGDEVKKICIQQF |
Parental | IKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHL |
IKIDGKV.TDITYPAGFMDVISIDKTGENF.LI.DTKGRFAVH.ITPEEAKYKLCKVRKIFVGTKGI..L | |
Retrocopy | IKIDGKVQTDITYPAGFMDVISIDKTGENFHLICDTKGRFAVHHITPEEAKYKLCKVRKIFVGTKGISRL |
Parental | VTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVIT-NRERHPGSFDVV |
VTHDARTI.YPDPLIKVND.IQIDLETGKITDF.KFDTGNLCMVTG.ANLGRIGVIT..RERH.GSFDVV | |
Retrocopy | VTHDARTIHYPDPLIKVNDIIQIDLETGKITDFTKFDTGNLCMVTGSANLGRIGVIT<HRERHRGSFDVV |
Parental | HVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG |
H.KDAN.N.FATRLSNIFVIGKGNK..IS...GKG..LTI.EERDKRLAAKQSSG | |
Retrocopy | HMKDANSNRFATRLSNIFVIGKGNKL*ISFS*GKGTHLTIVEERDKRLAAKQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .04 RPM | 1077 .78 RPM |
bodymap2_adrenal | 0 .00 RPM | 994 .39 RPM |
bodymap2_brain | 0 .00 RPM | 249 .47 RPM |
bodymap2_breast | 0 .00 RPM | 912 .87 RPM |
bodymap2_colon | 0 .00 RPM | 1472 .93 RPM |
bodymap2_heart | 0 .00 RPM | 215 .90 RPM |
bodymap2_kidney | 0 .04 RPM | 575 .10 RPM |
bodymap2_liver | 0 .08 RPM | 226 .26 RPM |
bodymap2_lung | 0 .00 RPM | 826 .90 RPM |
bodymap2_lymph_node | 0 .07 RPM | 1412 .13 RPM |
bodymap2_ovary | 0 .10 RPM | 2009 .69 RPM |
bodymap2_prostate | 0 .02 RPM | 1321 .94 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 719 .78 RPM |
bodymap2_testis | 0 .00 RPM | 641 .02 RPM |
bodymap2_thyroid | 0 .00 RPM | 887 .86 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 1229 .94 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_784 |
Gorilla gorilla | retro_ggor_895 |
Pongo abelii | retro_pabe_954 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .17 RPM |
CEU_NA11930 | 0 .07 RPM |
CEU_NA12004 | 0 .08 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .07 RPM |
CEU_NA12760 | 0 .04 RPM |
CEU_NA12827 | 0 .05 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .10 RPM |
FIN_HG00183 | 0 .05 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .06 RPM |
FIN_HG00321 | 0 .06 RPM |
FIN_HG00328 | 0 .05 RPM |
FIN_HG00338 | 0 .04 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .10 RPM |
FIN_HG00377 | 0 .08 RPM |
FIN_HG00378 | 0 .13 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .05 RPM |
GBR_HG00119 | 0 .10 RPM |
GBR_HG00131 | 0 .09 RPM |
GBR_HG00133 | 0 .10 RPM |
GBR_HG00134 | 0 .07 RPM |
GBR_HG00137 | 0 .08 RPM |
GBR_HG00142 | 0 .08 RPM |
GBR_HG00143 | 0 .13 RPM |
TSI_NA20512 | 0 .08 RPM |
TSI_NA20513 | 0 .07 RPM |
TSI_NA20518 | 0 .06 RPM |
TSI_NA20532 | 0 .07 RPM |
TSI_NA20538 | 0 .09 RPM |
TSI_NA20756 | 0 .06 RPM |
TSI_NA20765 | 0 .15 RPM |
TSI_NA20771 | 0 .14 RPM |
TSI_NA20786 | 0 .10 RPM |
TSI_NA20798 | 0 .06 RPM |
YRI_NA18870 | 0 .14 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .13 RPM |
YRI_NA19093 | 0 .05 RPM |
YRI_NA19099 | 0 .08 RPM |
YRI_NA19114 | 0 .08 RPM |
YRI_NA19118 | 0 .10 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .12 RPM |
YRI_NA19223 | 0 .08 RPM |