RetrogeneDB ID: | retro_hsap_887 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 11:67450238..67450529(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000239559 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37 | ||
Ensembl ID: | ENSG00000145592 | ||
Aliases: | None | ||
Description: | ribosomal protein L37 [Source:HGNC Symbol;Acc:10347] |
Percent Identity: | 89.69 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIV |
MTKG.SSFGK.RNKTHTLCR.CGS.AYHLQKSTCGKCGY.AKRKRKYNWSAKAKR..TT.TGRMRHLKIV | |
Retrocopy | MTKGASSFGKHRNKTHTLCRCCGSEAYHLQKSTCGKCGYSAKRKRKYNWSAKAKR*KTTRTGRMRHLKIV |
Parental | YRRFRHGFREGTTPKPKRAAVAASSSS |
..RFRHGFREGTTPKPKRAAVAASSSS | |
Retrocopy | *HRFRHGFREGTTPKPKRAAVAASSSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .02 RPM | 379 .97 RPM |
bodymap2_adrenal | 0 .04 RPM | 602 .62 RPM |
bodymap2_brain | 0 .02 RPM | 199 .19 RPM |
bodymap2_breast | 0 .02 RPM | 316 .95 RPM |
bodymap2_colon | 0 .08 RPM | 431 .48 RPM |
bodymap2_heart | 0 .00 RPM | 114 .35 RPM |
bodymap2_kidney | 0 .06 RPM | 162 .88 RPM |
bodymap2_liver | 0 .02 RPM | 154 .67 RPM |
bodymap2_lung | 0 .14 RPM | 449 .12 RPM |
bodymap2_lymph_node | 0 .13 RPM | 528 .89 RPM |
bodymap2_ovary | 0 .10 RPM | 616 .36 RPM |
bodymap2_prostate | 0 .07 RPM | 551 .37 RPM |
bodymap2_skeletal_muscle | 0 .24 RPM | 417 .43 RPM |
bodymap2_testis | 0 .00 RPM | 270 .37 RPM |
bodymap2_thyroid | 0 .02 RPM | 265 .52 RPM |
bodymap2_white_blood_cells | 0 .22 RPM | 595 .52 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_17690 | 2 libraries | 0 libraries | 0 libraries | 0 libraries | 1827 libraries |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .49 RPM |
CEU_NA11843 | 1 .39 RPM |
CEU_NA11930 | 1 .76 RPM |
CEU_NA12004 | 0 .80 RPM |
CEU_NA12400 | 1 .40 RPM |
CEU_NA12751 | 0 .56 RPM |
CEU_NA12760 | 2 .25 RPM |
CEU_NA12827 | 1 .84 RPM |
CEU_NA12872 | 0 .71 RPM |
CEU_NA12873 | 0 .89 RPM |
FIN_HG00183 | 1 .02 RPM |
FIN_HG00277 | 2 .26 RPM |
FIN_HG00315 | 0 .88 RPM |
FIN_HG00321 | 0 .66 RPM |
FIN_HG00328 | 0 .69 RPM |
FIN_HG00338 | 1 .26 RPM |
FIN_HG00349 | 0 .80 RPM |
FIN_HG00375 | 0 .93 RPM |
FIN_HG00377 | 0 .78 RPM |
FIN_HG00378 | 0 .72 RPM |
GBR_HG00099 | 0 .67 RPM |
GBR_HG00111 | 0 .90 RPM |
GBR_HG00114 | 0 .63 RPM |
GBR_HG00119 | 0 .81 RPM |
GBR_HG00131 | 0 .80 RPM |
GBR_HG00133 | 0 .92 RPM |
GBR_HG00134 | 0 .57 RPM |
GBR_HG00137 | 0 .96 RPM |
GBR_HG00142 | 0 .92 RPM |
GBR_HG00143 | 1 .12 RPM |
TSI_NA20512 | 1 .19 RPM |
TSI_NA20513 | 0 .82 RPM |
TSI_NA20518 | 1 .03 RPM |
TSI_NA20532 | 2 .24 RPM |
TSI_NA20538 | 2 .26 RPM |
TSI_NA20756 | 0 .79 RPM |
TSI_NA20765 | 0 .56 RPM |
TSI_NA20771 | 0 .82 RPM |
TSI_NA20786 | 0 .58 RPM |
TSI_NA20798 | 0 .53 RPM |
YRI_NA18870 | 0 .78 RPM |
YRI_NA18907 | 0 .83 RPM |
YRI_NA18916 | 0 .78 RPM |
YRI_NA19093 | 0 .70 RPM |
YRI_NA19099 | 0 .75 RPM |
YRI_NA19114 | 0 .63 RPM |
YRI_NA19118 | 1 .16 RPM |
YRI_NA19213 | 0 .43 RPM |
YRI_NA19214 | 0 .61 RPM |
YRI_NA19223 | 1 .17 RPM |