RetrogeneDB ID: | retro_pabe_1967 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2a:85469199..85469442(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37 | ||
Ensembl ID: | ENSPPYG00000015422 | ||
Aliases: | None | ||
Description: | ribosomal protein L37 [Source:HGNC Symbol;Acc:10347] |
Percent Identity: | 86.42 % |
Parental protein coverage: | 83.51 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | HTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGTTPK |
HT.CR.CGSKAYHLQK.TCGK.GY.AK.KRKYNWSAKAKRRNTT.TG.MRHLKI.Y.RFRHGF.EGTTPK | |
Retrocopy | HTSCRCCGSKAYHLQKLTCGKHGYLAKCKRKYNWSAKAKRRNTTRTG*MRHLKIIYHRFRHGFHEGTTPK |
Parental | PKRAAVAASSS |
PKRAAVAASSS | |
Retrocopy | PKRAAVAASSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 62 .42 RPM |
SRP007412_cerebellum | 0 .12 RPM | 60 .68 RPM |
SRP007412_heart | 0 .00 RPM | 63 .73 RPM |
SRP007412_kidney | 0 .03 RPM | 73 .02 RPM |
SRP007412_liver | 0 .00 RPM | 81 .68 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2239 |
Pan troglodytes | retro_ptro_1584 |
Gorilla gorilla | retro_ggor_1670 |