RetrogeneDB ID: | retro_pabe_1840 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 21:19503266..19503504(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37 | ||
Ensembl ID: | ENSPPYG00000015422 | ||
Aliases: | None | ||
Description: | ribosomal protein L37 [Source:HGNC Symbol;Acc:10347] |
Percent Identity: | 71.95 % |
Parental protein coverage: | 82.47 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LCRRCG-SKAYHLQK-STCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGTTPK |
LC..CG.S..YHLQK..TCGKCGY.AK.KRK.NWSAKAKR.N.TGTG.MR.LKI.Y.RFRHGF.E.TTPK | |
Retrocopy | LCHHCG<SRIYHLQK<VTCGKCGYSAKHKRKCNWSAKAKRQNITGTG*MRQLKIGYSRFRHGFHEETTPK |
Parental | PKRAAVAASSSS |
PKRAA...S.S. | |
Retrocopy | PKRAAATESNST |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 62 .42 RPM |
SRP007412_cerebellum | 0 .00 RPM | 60 .68 RPM |
SRP007412_heart | 0 .00 RPM | 63 .73 RPM |
SRP007412_kidney | 0 .00 RPM | 73 .02 RPM |
SRP007412_liver | 0 .00 RPM | 81 .68 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2499 |
Pan troglodytes | retro_ptro_1451 |
Gorilla gorilla | retro_ggor_1558 |
Macaca mulatta | retro_mmul_1672 |