RetrogeneDB ID: | retro_pabe_466 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:175887213..175887500(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37 | ||
Ensembl ID: | ENSPPYG00000015422 | ||
Aliases: | None | ||
Description: | ribosomal protein L37 [Source:HGNC Symbol;Acc:10347] |
Percent Identity: | 77.32 % |
Parental protein coverage: | 98.97 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | TKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCG-YPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIV |
TKGTSSFGK..NKTH.LC.RC..KAYHLQKSTCGKC..Y.AK.KRK.NWS....R.NTTGT..MRHLK.V | |
Retrocopy | TKGTSSFGKHCNKTHMLCCRCAPKAYHLQKSTCGKCA<YLAKHKRK*NWSTNTER*NTTGTSQMRHLKSV |
Parental | YRRFRHGFREGTTPKPKRAAVAASSSS |
Y.RFRHGF.EGTTP.PKRAAVAASSSS | |
Retrocopy | YHRFRHGFHEGTTPRPKRAAVAASSSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 62 .42 RPM |
SRP007412_cerebellum | 0 .00 RPM | 60 .68 RPM |
SRP007412_heart | 0 .00 RPM | 63 .73 RPM |
SRP007412_kidney | 0 .00 RPM | 73 .02 RPM |
SRP007412_liver | 0 .00 RPM | 81 .68 RPM |