RetrogeneDB ID: | retro_ptro_403 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 1:224103932..224104220(-) | ||
Located in intron of: | ENSPTRG00000002180 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37 | ||
Ensembl ID: | ENSPTRG00000016822 | ||
Aliases: | None | ||
Description: | Pan troglodytes ribosomal protein L37 (RPL37), mRNA. [Source:RefSeq mRNA;Acc:NM_001246471] |
Percent Identity: | 87.63 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIV |
.TK.TSSFGKRRNKTHT.C..CGSKAYHLQK.TCGKCGYPAKRKRKYN.SAKAKR.NTTGTGRMRHLKIV | |
Retrocopy | VTKATSSFGKRRNKTHT-CHCCGSKAYHLQKLTCGKCGYPAKRKRKYNGSAKAKRQNTTGTGRMRHLKIV |
Parental | YRRFRHGFREGTTPKPKRAAVAASSSS |
.RRFRH.FREGT.PKPKRAA.AASSSS | |
Retrocopy | DRRFRHRFREGTPPKPKRAAAAASSSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .04 RPM | 186 .20 RPM |
SRP007412_cerebellum | 0 .22 RPM | 129 .27 RPM |
SRP007412_heart | 0 .03 RPM | 107 .00 RPM |
SRP007412_kidney | 0 .05 RPM | 357 .44 RPM |
SRP007412_liver | 0 .23 RPM | 210 .97 RPM |
SRP007412_testis | 0 .32 RPM | 46 .90 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_537 |
Gorilla gorilla | retro_ggor_490 |
Pongo abelii | retro_pabe_212 |