RetrogeneDB ID: | retro_pabe_1951 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2a:48362480..48362769(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37 | ||
Ensembl ID: | ENSPPYG00000015422 | ||
Aliases: | None | ||
Description: | ribosomal protein L37 [Source:HGNC Symbol;Acc:10347] |
Percent Identity: | 69.7 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MTKGTSSFGKRRNKTHTLC-RRCGSKAYHLQKSTCGKCGYPAK-RKRKYNWSAKAKRRNTTGTGRMRHLK |
MTKG.SS..K..NK.H..C...C.SK.Y.LQKS.CGKCGYP.K..K.KYNWSA.AK...T.GTGRMRHLK | |
Retrocopy | MTKGMSSSRKWCNKMHS*C<LPCDSKIYLLQKSACGKCGYPPK<AKIKYNWSAEAKKQYTSGTGRMRHLK |
Parental | IVYRRFRHGFREGTTPKPKRAAVAASSSS |
IVY.R.RHGF.EGT.PKPKR.AVA.SSSS | |
Retrocopy | IVYSRLRHGFCEGTPPKPKRTAVAGSSSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .11 RPM | 62 .42 RPM |
SRP007412_cerebellum | 0 .24 RPM | 60 .68 RPM |
SRP007412_heart | 0 .03 RPM | 63 .73 RPM |
SRP007412_kidney | 0 .10 RPM | 73 .02 RPM |
SRP007412_liver | 0 .03 RPM | 81 .68 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2265 |
Pan troglodytes | retro_ptro_1605 |