RetrogeneDB ID: | retro_pabe_1705 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1_random:1550257..1550504(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37 | ||
Ensembl ID: | ENSPPYG00000015422 | ||
Aliases: | None | ||
Description: | ribosomal protein L37 [Source:HGNC Symbol;Acc:10347] |
Percent Identity: | 57.65 % |
Parental protein coverage: | 85.57 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | KTHTLCRRCGSKAYHLQ-KSTCGKCGYPAKRKRKYNWSAKAKRRN-TTGTGRMRHLKIVYRRFRHGFREG |
.T.T.C..CGS.A.HLQ..S.CGKCG.PA...RK..W...A.R....TGTG.MR.LKIV..RFRHGF..G | |
Retrocopy | ETSTRCCHCGSEACHLQ<ESACGKCGRPARCPRK*DWGVRANRKK<ATGTGQMRLLKIVCHRFRHGFHDG |
Parental | TTPKPKRAAVAASSS |
T.P.P.RAA.AA..S | |
Retrocopy | TAPEPQRAAAAAPGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 62 .42 RPM |
SRP007412_cerebellum | 0 .00 RPM | 60 .68 RPM |
SRP007412_heart | 0 .00 RPM | 63 .73 RPM |
SRP007412_kidney | 0 .00 RPM | 73 .02 RPM |
SRP007412_liver | 0 .00 RPM | 81 .68 RPM |