RetrogeneDB ID: | retro_hsap_2239 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 2:26901092..26901335(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000225024 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37 | ||
Ensembl ID: | ENSG00000145592 | ||
Aliases: | None | ||
Description: | ribosomal protein L37 [Source:HGNC Symbol;Acc:10347] |
Percent Identity: | 79.01 % |
Parental protein coverage: | 83.51 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | HTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGTTPK |
HTLC..CG.KAYHLQK.TCGKCGY.AK..RKYNWSAKAKR.NTT.T...RHLKI.Y..FRHGF.EGTTPK | |
Retrocopy | HTLCHCCGCKAYHLQKLTCGKCGYLAKCERKYNWSAKAKR*NTTRTS*IRHLKIIYHTFRHGFHEGTTPK |
Parental | PKRAAVAASSS |
PKRAAVA.SSS | |
Retrocopy | PKRAAVATSSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 379 .97 RPM |
bodymap2_adrenal | 0 .00 RPM | 602 .62 RPM |
bodymap2_brain | 0 .00 RPM | 199 .19 RPM |
bodymap2_breast | 0 .00 RPM | 316 .95 RPM |
bodymap2_colon | 0 .00 RPM | 431 .48 RPM |
bodymap2_heart | 0 .00 RPM | 114 .35 RPM |
bodymap2_kidney | 0 .00 RPM | 162 .88 RPM |
bodymap2_liver | 0 .00 RPM | 154 .67 RPM |
bodymap2_lung | 0 .00 RPM | 449 .12 RPM |
bodymap2_lymph_node | 0 .00 RPM | 528 .89 RPM |
bodymap2_ovary | 0 .00 RPM | 616 .36 RPM |
bodymap2_prostate | 0 .00 RPM | 551 .37 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 417 .43 RPM |
bodymap2_testis | 0 .00 RPM | 270 .37 RPM |
bodymap2_thyroid | 0 .00 RPM | 265 .52 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 595 .52 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_121535 | 305 libraries | 399 libraries | 1029 libraries | 88 libraries | 8 libraries |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1584 |
Gorilla gorilla | retro_ggor_1670 |
Pongo abelii | retro_pabe_1967 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |