RetrogeneDB ID: | retro_pabe_707 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 11:71084571..71084854(+) | ||
Located in intron of: | ENSPPYG00000003692 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37 | ||
Ensembl ID: | ENSPPYG00000015422 | ||
Aliases: | None | ||
Description: | ribosomal protein L37 [Source:HGNC Symbol;Acc:10347] |
Percent Identity: | 57.14 % |
Parental protein coverage: | 98.97 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | TKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIV- |
T...S.FG......HTLC...G..A.H.QK.TCGKC.YP.K.KRKY.W.AKAK..NTT.T.RMRHLKIV. | |
Retrocopy | TPHSSLFGNLAMR-HTLCFCGGT*AFHFQKVTCGKCCYPTKHKRKYSWNAKAKS*NTTATSRMRHLKIV< |
Parental | YRRFRHGFREGTT-PKPKRAAVAASSSS |
.RR.RHGF..GTT.......A..A.SSS | |
Retrocopy | HRRPRHGFYKGTT<TSKSKRAAVAASSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 62 .42 RPM |
SRP007412_cerebellum | 0 .00 RPM | 60 .68 RPM |
SRP007412_heart | 0 .00 RPM | 63 .73 RPM |
SRP007412_kidney | 0 .00 RPM | 73 .02 RPM |
SRP007412_liver | 0 .00 RPM | 81 .68 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_795 |
Pan troglodytes | retro_ptro_553 |