RetrogeneDB ID:

retro_mluc_1897

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429941:2673710..2673917(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL37
Ensembl ID:ENSMLUG00000001565
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_1897
TACCACCTTAGGAAGTTACCTGTGGAAAATGTATATAACCTGCTACGTGCAAAGAGAAAGTGTAACTGAAGTGCCAAGGC
TGAACAACAAAATGCCACCAATACTGGTCAAATGAGGCATCTAAAAATTGTATACTACAGATTTAGGCAAAAGTGTCCTG
AAAGAACTACAAAGAAATCTGAGAGGGAAGAAACTGCATCATCCAGT

ORF - retro_mluc_1897 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 59.15 %
Parental protein coverage: 71.13 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalYHLQKS-TCGKCGYPA-KRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGTTPKPKRAAVAAS
YHL.K..TCGKC..PA...KRK.N.SAKA...N.T.TG.MRHLKIVY.RFR....E.TT.K..R...A.S
RetrocopyYHLRKL<TCGKCI*PA>RAKRKCN*SAKAEQQNATNTGQMRHLKIVYYRFRQKCPERTTKKSEREETASS
ParentalS
S
RetrocopyS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_1897 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 11 parental genes, and 117 retrocopies.

Species Parental gene accession Retrocopies number
Homo sapiens ENSG0000014559221 retrocopies
Latimeria chalumnae ENSLACG000000027871 retrocopy
Loxodonta africana ENSLAFG0000003005213 retrocopies
Myotis lucifugus ENSMLUG00000001565 10 retrocopies
Macaca mulatta ENSMMUG000000238076 retrocopies
Monodelphis domestica ENSMODG000000203013 retrocopies
Nomascus leucogenys ENSNLEG000000165084 retrocopies
Otolemur garnettii ENSOGAG000000343007 retrocopies
Pongo abelii ENSPPYG0000001542226 retrocopies
Pan troglodytes ENSPTRG0000001682220 retrocopies
Rattus norvegicus ENSRNOG000000125386 retrocopies



Copyright © RetrogeneDB 2014-2017