RetrogeneDB ID:

retro_mluc_2456

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL430438:345605..346168(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CDC42
Ensembl ID:ENSMLUG00000013365
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_2456
ATGCAGACAATTAAATGCATTATTGTGGGCGATGGTGCCATTGTTAAGACATGTCTCCTAATATCCTACACAATAAGCAA
ATTTCCATCTGACTATGTACCAACTGTTTTTGACAACTATGTAGTCACAATTGTGATTGGTGGAGAGCCATACTCTTAGA
CTTTTTGATACAGCAGGGCAAGAGAATATGACAAGATTTTGACTGCTGAGTTATCCACAAGCAGATGTATTTCTAGTCTG
TTTTTCAGTGGTCTCTCCATCCTCATTTGAAAACATTAAAGAAAAGTGGTGCCTGAAATAACTCACTACTGTCCATAGAC
TCCTTTTTCTTGCTTGTTGGGACCCAAATTGATCTCAGAGATGACCCCTCTACTATTGAAACTTGCCAAGAACAAACAAA
AGCCTATCATTCAGGCTGCTGAAAAACTGGCCCGTGACCTGAAGGCCGTCAAATATGTGGAGCATTCTGCACTCACACAG
AAAGGCCTAAAGAATATATTTGATGAAGCAAATTGGCTGCCCTGGAGCCCCCAGAACAGAAGAGCTGCAGGTGTGTGTTG
CTA

ORF - retro_mluc_2456 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 72.31 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG-EPYTLGLFDTAGQEDYDRLRP
MQTIKC..VGDGA..KTCLLISYT..KFPS.YVPTVFDNY.V.....G.E..TL.LFDTAGQE...R...
RetrocopyMQTIKCIIVGDGAIVKTCLLISYTISKFPSDYVPTVFDNY-VVTIVIG>ESHTLRLFDTAGQENMTRF*L
ParentalLSYPQTDVFLVCFSVVSPSSFENVKEKW-VPEITHHCPKTPF-LLVGTQIDLRDDPSTIEKLAKNKQKPI
LSYPQ.DVFLVCFSVVSPSSFEN.KEKW.VPEITH.CP.TPF..L.G........P....KLAKNKQKPI
RetrocopyLSYPQADVFLVCFSVVSPSSFENIKEKW<VPEITHYCP*TPFSCLLGPKLISEMTPLLL-KLAKNKQKPI
ParentalTPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA-ILAALEPPEPKKSRRCVLL
....AEKLARDLKAVKYVE.SALTQKGLKN.FDEA..LAALEPPE..KS.RCVLL
RetrocopyI-QAAEKLARDLKAVKYVEHSALTQKGLKNIFDEA<KLAALEPPE-QKSCRCVLL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_2456 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 17 parental genes, and 55 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000147075 retrocopies
Choloepus hoffmanni ENSCHOG0000000530610 retrocopies
Callithrix jacchus ENSCJAG000000059126 retrocopies
Cavia porcellus ENSCPOG000000065434 retrocopies
Equus caballus ENSECAG000000191801 retrocopy
Felis catus ENSFCAG000000048534 retrocopies
Homo sapiens ENSG000000708316 retrocopies
Myotis lucifugus ENSMLUG000000015671 retrocopy
Myotis lucifugus ENSMLUG000000097011 retrocopy
Myotis lucifugus ENSMLUG000000126682 retrocopies
Myotis lucifugus ENSMLUG00000013365 4 retrocopies
Monodelphis domestica ENSMODG000000160783 retrocopies
Mustela putorius furoENSMPUG000000159992 retrocopies
Oryctolagus cuniculus ENSOCUG000000099861 retrocopy
Otolemur garnettii ENSOGAG000000142611 retrocopy
Sorex araneus ENSSARG000000051843 retrocopies
Sus scrofa ENSSSCG000000035201 retrocopy



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