RetrogeneDB ID: | retro_vpac_300 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_550:36210..36529(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FTH1 | ||
Ensembl ID: | ENSVPAG00000003956 | ||
Aliases: | None | ||
Description: | ferritin, heavy polypeptide 1 [Source:HGNC Symbol;Acc:3976] |
Percent Identity: | 65.74 % |
Parental protein coverage: | 61.63 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | QNYHQDSKAAINRQITQKYA-SYVYLSMSYYFDRDDVALKNFAKYFLHQ-SHEEREHAEKLMKLQNQRGG |
QNYH..S.A.IN..I......SY.YLS.SYYFD...VALK.FA.Y.LHQ.SHEER.HAEKLMKLQN..G. | |
Retrocopy | QNYHEESEATINHKISLELCTSYLYLSLSYYFDCNNVALKSFAIYSLHQ>SHEERKHAEKLMKLQNP*GD |
Parental | RIFLQDIKKPDYDDWENGLNAMECALHLEKSVNQSLLE |
..FLQDIKKPD...WENGLN.MEC..HLE.S..QSLL. | |
Retrocopy | PVFLQDIKKPDQENWENGLNTMECVFHLE-SMTQSLLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |