RetrogeneDB ID: | retro_vpac_643 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_91732:1126..1638(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSVPAG00000010061 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FTH1 | ||
Ensembl ID: | ENSVPAG00000003956 | ||
Aliases: | None | ||
Description: | ferritin, heavy polypeptide 1 [Source:HGNC Symbol;Acc:3976] |
Percent Identity: | 65.7 % |
Parental protein coverage: | 98.26 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | QNYHQDSKAAINRQIT-QKYASYVYLSMSYYFDRDDV-ALKNFAKYFLHQSHEERE-HAEKLMKLQNQRG |
QNYH....AA.N.QIT....ASYV.L.M..YFDRDDV.ALK.FA..FL..S...RE..AE.LM.LQNQRG | |
Retrocopy | QNYHAECEAAVNCQITLELHASYVCLDMAFYFDRDDV>ALKHFASFFLRRSRQLRE>WAESLMRLQNQRG |
Parental | GRIFLQDIKKPDYDDWENGLNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFLETHYLNEQVKSIKE |
GR....DI.KPD.D.WE.GL.AM.CAL.LEKSVNQ.LL.LH.LA.DK.D.HLC..L..H.LN.QV..IKE | |
Retrocopy | GRLCFHDIRKPDRDAWESGLQAMQCALCLEKSVNQTLLDLHQLASDKSDAHLCHYLQRHCLNQQVEFIKE |
Parental | LGDHVTNLRKMGAPESGIAEFLFDKHTLGNSD |
LGDH.T.LRKMGAPE.G.AE.LFDK.TLG.SD | |
Retrocopy | LGDHITTLRKMGAPEVGMAEYLFDKLTLGESD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |