RetrogeneDB ID: | retro_vpac_233 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_3081:41830..42349(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSVPAG00000005713 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FTH1 | ||
Ensembl ID: | ENSVPAG00000003956 | ||
Aliases: | None | ||
Description: | ferritin, heavy polypeptide 1 [Source:HGNC Symbol;Acc:3976] |
Percent Identity: | 74.86 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | QNYHQDSKAAINRQIT-QKYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGR |
QN.H.DS.AAINRQI....YASYVYLSM.YYF.RDDVAL.NFA.YFL.QS.EE..HAEKLM.LQNQRGGR | |
Retrocopy | QNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALHNFARYFLRQSREETVHAEKLMRLQNQRGGR |
Parental | IFLQDIKKPDYDDWENGLNAMECA-LHLEKSVNQSLLELHKLATDKND-PHLCDFLETHYLNEQVKSIKE |
I.LQDIKKP..DDWE.GLNAMEC....LEK.VNQSLLELH.LA.DK.D.PHLCDFLETHY.NEQVKSIKE | |
Retrocopy | ICLQDIKKPEQDDWESGLNAMECS<MLLEKNVNQSLLELHTLASDKGD>PHLCDFLETHYVNEQVKSIKE |
Parental | LGDHVTNLRKMGAPESGIAEFLFDKHTLGNSDNES |
L.D.V.NL.KM.AP.SG.AE.L.DKHTLG...N.. | |
Retrocopy | LADLVHNLVKMWAPDSGLAEYLSDKHTLGSENNQN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |