RetrogeneDB ID:

retro_ogar_2661

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873644.1:4276212..4276802(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000015960
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:FTH1
Ensembl ID:ENSOGAG00000025354
Aliases:None
Description:ferritin, heavy polypeptide 1 [Source:HGNC Symbol;Acc:3976]


Retrocopy-Parental alignment summary:






>retro_ogar_2661
CCAAGGCCCCCGCCTCCACTCCAACGCTAAGCAGCCGCCGCCATGACTACCGCAACCCCCTCGCAGGTGTGCCAGAACTA
CCACCAGGACTCCGAGGCCGCCATCAACCGCCAGATCAACCTGGAGCTCCACGCCTCCTACTTCTACCTGTCCATGTCTT
ACTACTTTGACCACGATGATGTGGCTTTGAAGAATTTTGCCAAATACTTTCTTCACCAATCTCATGAGGAGAGGGAATAT
GCGGAGAAACTGATGAAGCTGCAGAATCAACTAGGTGGCCGAATCTTCCTTCAGGATATCAAAAAAACAGACTGTGATGA
CTGGAAGGCCAGGCTGAATGCGATGGAGTGTGTGTTACACTTGGAAAAAAGTGTGAATCAGTCACTACTGGAACTGCACA
AACTGGCCACTGACAAAAATGACCCCCCCTTTGTGTCTTCATTGAGACACATTACCTGAATGAGCAGGTGAAATCCATCA
AAGAACTGGGTGACCACATAACCAACCTGCACAAGATGGGAGCCCCTGAATCTGGCATGGCAGAGTATCTGTTTGACCAG
CACACCCTGGGAGACAGTGATAATGAGAGC

ORF - retro_ogar_2661 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.27 %
Parental protein coverage: 85.15 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalPSQGPRRRLSSTAAMTTASPSQVRQNYHQDSESGNISAASLE-HNTFMFPFQSYYFDRDDVALKNFAKYF
P...P.......AAMTTA.PSQV.QNYHQDSE........LE.H........SYYFD.DDVALKNFAKYF
RetrocopyPRPPPPLQR*AAAAMTTATPSQVCQNYHQDSEAAINRQINLELHASYFYLSMSYYFDHDDVALKNFAKYF
ParentalLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKP-DCDDWESGLNAMECALHLEKSVNQSLLELHKLATDKN
LHQSHEERE.AEKLMKLQNQ.GGRIFLQDIK..DCDDW...LNAMEC.LHLEKSVNQSLLELHKLATDKN
RetrocopyLHQSHEEREYAEKLMKLQNQLGGRIFLQDIKKTDCDDWKARLNAMECVLHLEKSVNQSLLELHKLATDKN
ParentalDPH-LCDFIETHYLHEQVKSIKELGDHVTNLRKMGAPESGMAEYLFDKHTLGDSDNES
DP..LC.FIETHYL.EQVKSIKELGDH.TNL.KMGAPESGMAEYLFD.HTLGDSDNES
RetrocopyDPP<LCVFIETHYLNEQVKSIKELGDHITNLHKMGAPESGMAEYLFDQHTLGDSDNES

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2661 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 20 parental genes, and 203 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000168311 retrocopy
Canis familiaris ENSCAFG000000159011 retrocopy
Callithrix jacchus ENSCJAG0000001908916 retrocopies
Cavia porcellus ENSCPOG000000265863 retrocopies
Dasypus novemcinctus ENSDNOG0000001712883 retrocopies
Felis catus ENSFCAG000000073821 retrocopy
Gorilla gorilla ENSGGOG000000277227 retrocopies
Latimeria chalumnae ENSLACG000000174261 retrocopy
Loxodonta africana ENSLAFG0000000482412 retrocopies
Microcebus murinus ENSMICG000000058516 retrocopies
Myotis lucifugus ENSMLUG0000002572616 retrocopies
Monodelphis domestica ENSMODG000000075829 retrocopies
Mustela putorius furoENSMPUG000000140303 retrocopies
Oryctolagus cuniculus ENSOCUG000000141084 retrocopies
Otolemur garnettii ENSOGAG00000025354 9 retrocopies
Pongo abelii ENSPPYG0000000317312 retrocopies
Pteropus vampyrus ENSPVAG000000130383 retrocopies
Sus scrofa ENSSSCG000000145409 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000145211 retrocopy
Vicugna pacos ENSVPAG000000039566 retrocopies



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