RetrogeneDB ID: | retro_sara_623 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_243017:16616..17078(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSARG00000001088 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.41 % |
Parental protein coverage: | 60.89 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | INGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRI-VEPYIAWGY----PNLKSVNELIYKRGYGKI |
I.GV.PKV..VLQLL.L.......FVKLNKAS.NMLRI.VEP.IAWG.....PNLK.VNELIYK.GYGKI | |
Retrocopy | IKGVIPKVQTVLQLLGLGLGLHSIFVKLNKASTNMLRI>VEPFIAWGVEEWDPNLKLVNELIYKCGYGKI |
Parental | H-KKRIALTDNALIARTLGKYGIVCMEDLIHEIYTVGKRFKEANNFLWPFKLSSPR-GGMKKKTTHFVEG |
H......L.D.ALI..TLG..GI.C.ED.IHEI.TVGK.FK.ANN.L.PFKL...R.G.MKK.TTHFVEG | |
Retrocopy | H>QEPNCLKDEALIF-TLGEHGIICTEDMIHEI*TVGKHFKAANNLL*PFKLCYSR<GEMKKRTTHFVEG |
Parental | GDAGNREDQI-NRLIRRMN |
GDAGNRE.Q...RLI...N | |
Retrocopy | GDAGNREAQV<IRLIKQIN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |