RetrogeneDB ID: | retro_tsyr_1153 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_32718:4802..5362(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPE | ||
Ensembl ID: | ENSTSYG00000003304 | ||
Aliases: | None | ||
Description: | ribulose-5-phosphate-3-epimerase [Source:HGNC Symbol;Acc:10293] |
Percent Identity: | 84.04 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | HFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSRPEQWVKPMAVAGANQYTFHLEATENPGALIKDIREN |
HF.PNITFGHPVVESL..QLGQDP.FDM.MM.SR.E.W...MA.AGANQYTFHLEATENPGA.IKDIREN | |
Retrocopy | HFAPNITFGHPVVESL*RQLGQDPLFDMCMMASRLEEWTRSMAAAGANQYTFHLEATENPGASIKDIREN |
Parental | GMKVGLAIKPGTTVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPD |
GMKVGLAIKPGTTVEY..PW.NQID.ALVMTVEPG.GGQKFMED.MPK.H.LRTQ.PSLD.EVDGGVGPD | |
Retrocopy | GMKVGLAIKPGTTVEYSVPWNNQIDTALVMTVEPGCGGQKFMEDIMPKGHGLRTQLPSLDTEVDGGVGPD |
Parental | TVHKCAEAGANMIVSGSAIMRSED-PRSVINLLRNVCSEAAQKRSLDR |
T.HKCAEAGANMI.SGSA.M.SED.PRSVINLLR.VCSEA.QKRSLDR | |
Retrocopy | TAHKCAEAGANMIMSGSATMKSED<PRSVINLLRSVCSEATQKRSLDR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |