RetrogeneDB ID: | retro_ogar_2673 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873646.1:5001834..5002386(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPE | ||
Ensembl ID: | ENSOGAG00000002778 | ||
Aliases: | None | ||
Description: | ribulose-5-phosphate-3-epimerase [Source:HGNC Symbol;Acc:10293] |
Percent Identity: | 75.13 % |
Parental protein coverage: | 81.58 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | HFVPNITFGHPV-VESLRKQLGQDP-FFDMHMMVSRPE-QWVKPMAVAGANQYTFHLEATENPGALIKDI |
HFVP.ITFGHP..V.SL..Q.GQDP.F.DMHM.VSRP..QWVK..AVAGA.QYTF..EA.ENPG.L.KD. | |
Retrocopy | HFVPSITFGHPE<VSSL*MQRGQDP<FLDMHMVVSRPG<QWVKLVAVAGASQYTF*IEALENPGPLRKDM |
Parental | RENGMKVGLAIKPGTTVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGV |
.E...KVGLAIKPGTTVEYLAPW..QID.ALVMTVE.GFGGQKFMEDMMPKVHWL..QFPSLDIE..GG. | |
Retrocopy | QEEEVKVGLAIKPGTTVEYLAPWTDQIDTALVMTVELGFGGQKFMEDMMPKVHWLMNQFPSLDIELGGG- |
Parental | GPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLD |
GPDTVH.CAE..A..I..GS.IM.SEDPRS...LLRNVCSEAAQK.SLD | |
Retrocopy | GPDTVHQCAEVAADTIAPGSTIMSSEDPRSMSKLLRNVCSEAAQKCSLD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |