RetrogeneDB ID: | retro_sscr_825 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 5:72762389..72762867(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000000777 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000016152 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.37 % |
Parental protein coverage: | 84.21 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MHMMVSRPEQWVKPMAVAGANQYTFHLEATENP-GAL-IKDIRENGMKVGLAIKPGTTVEYLAPWANQID |
.H.MV.R.EQWVKPMAV.G.NQYTFHLEATENP.GAL..K..R...MK.G.AIK.GT.VEYLAPW.NQID | |
Retrocopy | LHAMVFRREQWVKPMAVVGTNQYTFHLEATENP>GAL>LKTFRRM-MKAGFAIKLGTIVEYLAPWTNQID |
Parental | MALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTIHKCAEAGANMIVSGSAIMRSEDP |
MALV.TVE.GFGGQKFMEDMMPK...LRTQFPSLDIEVDGGVGPDTIHKCAEAGANMIV.GSAI..SE.P | |
Retrocopy | MALVLTVERGFGGQKFMEDMMPKIQRLRTQFPSLDIEVDGGVGPDTIHKCAEAGANMIVAGSAIVSSETP |
Parental | -RSVINLLRNVCSEAAQKRSLDR |
..SVINLLRNVCSEAAQK.SLD. | |
Retrocopy | <KSVINLLRNVCSEAAQKHSLDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 1 .46 RPM |
SRP014902_testis | 0 .00 RPM | 2 .12 RPM |
SRP018288_heart | 0 .00 RPM | 0 .73 RPM |
SRP018288_kidney | 0 .00 RPM | 3 .05 RPM |
SRP018288_liver | 0 .00 RPM | 0 .32 RPM |
SRP018288_lung | 0 .00 RPM | 1 .02 RPM |
SRP018856_adipose | 0 .03 RPM | 4 .94 RPM |
SRP035408_brain | 0 .00 RPM | 0 .16 RPM |
SRP035408_liver | 0 .00 RPM | 0 .38 RPM |