RetrogeneDB ID: | retro_itri_1750 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393715.1:204682..205240(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000010322 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.95 % |
Parental protein coverage: | 79.24 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | HFVPNITFGHPVVESLRKQLGQDP-FFDMHMMVSKPEQWVKPMAVAGA-NQYT-FHLEATENPGALIKDI |
HFVP.ITF.HPVVESL.KQLGQ.P.FFD..M.VS......K..AVAGA...YT..HLE.T.N.GALI.DI | |
Retrocopy | HFVPSITFSHPVVESL*KQLGQNP<FFDVYMTVSRQDN*IKSVAVAGA<HSYT<LHLEVT*NTGALIEDI |
Parental | RENGMKVGLAIKPGTTVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGV |
.ENG.KVGL.IKP.T.V.YLAP.ANQI.MA...TVEPG.GGQKF.ED..PK.H.LRTQF.SLDI.V...V | |
Retrocopy | WENGVKVGLIIKPVTAV*YLAP*ANQIGMAFIVTVEPGCGGQKFKEDLIPKFHRLRTQFFSLDIVVESEV |
Parental | GPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRSLDR |
GPDTVHK.AEAGANM..SGS.IMRS.D.RSV...LRN.CSEAAQKRSL.. | |
Retrocopy | GPDTVHKYAEAGANMVLSGSVIMRSKDFRSVTIVLRNICSEAAQKRSLNQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |