RetrogeneDB ID: | retro_tsyr_2129 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_93942:1186..1636(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPE | ||
Ensembl ID: | ENSTSYG00000003304 | ||
Aliases: | None | ||
Description: | ribulose-5-phosphate-3-epimerase [Source:HGNC Symbol;Acc:10293] |
Percent Identity: | 85.33 % |
Parental protein coverage: | 80.21 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | HFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSRPEQWVKPMAVAGANQYTFHLEATENPGALIKDIREN |
HFVPNITFGHPVVESL.K.LGQDPFFDMHMMVSRPEQWVKPM.VAG.NQ.TF.L.ATENPG.LI.D..EN | |
Retrocopy | HFVPNITFGHPVVESL*KHLGQDPFFDMHMMVSRPEQWVKPMTVAGVNQSTFYLKATENPGDLITDM*EN |
Parental | GMKVGLAIKPGTTVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPD |
GMKV.LAIKPG.TVEYLAPWANQIDMALVM.VEPG.GGQKFME.MM.KVH.LRTQFPSLDIEVDGG.GPD | |
Retrocopy | GMKVVLAIKPGATVEYLAPWANQIDMALVMIVEPGCGGQKFMEEMMSKVH*LRTQFPSLDIEVDGGAGPD |
Parental | TVHKCAEAGA |
TVHKCA..G. | |
Retrocopy | TVHKCAVSGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |