RetrogeneDB ID: | retro_btau_815 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 2:34658113..34658500(+) | ||
Located in intron of: | ENSBTAG00000015317 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPE | ||
Ensembl ID: | ENSBTAG00000047806 | ||
Aliases: | None | ||
Description: | ribulose-phosphate 3-epimerase [Source:RefSeq peptide;Acc:NP_001091548] |
Percent Identity: | 62.6 % |
Parental protein coverage: | 68.98 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | NPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMP-KVHWLRTQFP |
NPGA.IKDI..N..KVGLAIK.GT.VEY..PWANQIDM.L..TVE.GF.G.KF.EDM.P.KV.WLRTQF. | |
Retrocopy | NPGAFIKDIWGNEIKVGLAIKQGTTVEYSVPWANQIDMVLDKTVESGF*G*KFTEDMIP<KVCWLRTQFL |
Parental | SLDIEVDGGVGPDTIHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCS-EAAQKRSLDR |
S....V.G....DT.H......ANMIVS.S.I.R.EDP...INLLR...S.EAAQK.SL.R | |
Retrocopy | SFGRQVNGKTDHDTLHNYTKTVANMIVSVSDIIRNEDPIFMINLLRYTFS>EAAQKNSLHR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 5 .48 RPM |
ERP005899_muscle | 0 .00 RPM | 9 .13 RPM |
SRP017611_brain | 0 .00 RPM | 5 .12 RPM |
SRP017611_kidney | 0 .00 RPM | 11 .08 RPM |
SRP017611_liver | 0 .00 RPM | 6 .64 RPM |
SRP030211_testis | 0 .01 RPM | 2 .23 RPM |
Species | RetrogeneDB ID |
---|---|
Canis familiaris | retro_cfam_1596 |
Equus caballus | retro_ecab_446 |