RetrogeneDB ID: | retro_pvam_636 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_461:398198..398671(-) | ||
Located in intron of: | ENSPVAG00000017520 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPE | ||
Ensembl ID: | ENSPVAG00000014452 | ||
Aliases: | None | ||
Description: | ribulose-5-phosphate-3-epimerase [Source:HGNC Symbol;Acc:10293] |
Percent Identity: | 74.84 % |
Parental protein coverage: | 69.3 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MASGCRIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGH-PVVESLRKQLGQDPFFDM |
.ASGC.I.PSILNS.LA...A.C..MLD..A.YLHLDVM..HFVPNITFG..PV.ESL.KQ.GQDPFFD. | |
Retrocopy | VASGCKISPSILNSILASFRAKCFQMLDPEASYLHLDVMGRHFVPNITFGS<PVGESLQKQQGQDPFFDV |
Parental | HMMVSRPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTTVEYLAPWANQIDMAL |
...V.R..QWVKPMAVAGANQYTFHL.ATENPGALIKDI.ENGMK.GL.I.PGTT...LAPWA.QI.MAL | |
Retrocopy | YILVLRLQQWVKPMAVAGANQYTFHLHATENPGALIKDIQENGMKFGLVIQPGTTFQSLAPWAHQINMAL |
Parental | VMTVEPGFGGQKFMEDMMP |
VM.VEPG.GGQK.MEDMMP | |
Retrocopy | VMAVEPGLGGQKLMEDMMP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |