RetrogeneDB ID: | retro_pabe_555 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 10:102322406..102323089(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPE | ||
Ensembl ID: | ENSPPYG00000013132 | ||
Aliases: | None | ||
Description: | ribulose-phosphate 3-epimerase [Source:RefSeq peptide;Acc:NP_001126655] |
Percent Identity: | 93.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MASGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMH |
MASGCKIG.SILNSDLANLGA.CLRMLDSG.DYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFD.H | |
Retrocopy | MASGCKIGLSILNSDLANLGAKCLRMLDSGTDYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDKH |
Parental | MMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALV |
MMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGM.VGLAIKPGTSVEYLAPWANQIDMALV | |
Retrocopy | MMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMNVGLAIKPGTSVEYLAPWANQIDMALV |
Parental | MTVEPGFGGQKF-MEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSV |
MTVEPGFGGQKF..EDMMPKVH.LRT.FPSLDIEVD.GVG.D.VHKCAEAGANMIVSGSAI.RSEDPRSV | |
Retrocopy | MTVEPGFGGQKF<QEDMMPKVH*LRTHFPSLDIEVDVGVGSDNVHKCAEAGANMIVSGSAIVRSEDPRSV |
Parental | INLLRNVCSEAAQKRSLDR |
INLLRNVCSEAAQ.RSLDR | |
Retrocopy | INLLRNVCSEAAQRRSLDR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .11 RPM | 7 .35 RPM |
SRP007412_cerebellum | 0 .12 RPM | 4 .74 RPM |
SRP007412_heart | 0 .00 RPM | 2 .05 RPM |
SRP007412_kidney | 0 .00 RPM | 11 .30 RPM |
SRP007412_liver | 0 .31 RPM | 5 .14 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_620 |