RetrogeneDB ID: | retro_pabe_2340 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:121244072..121244522(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPE | ||
Ensembl ID: | ENSPPYG00000013132 | ||
Aliases: | None | ||
Description: | ribulose-phosphate 3-epimerase [Source:RefSeq peptide;Acc:NP_001126655] |
Percent Identity: | 76.62 % |
Parental protein coverage: | 65.79 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | EQWVKPMAVAGANQY-TFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEP |
.QWVKPMA.AGANQY.TFHLEATENP.ALIKDI.EN.M.VGLAIK.GT.VEYLA...N.IDMAL.MT.EP | |
Retrocopy | KQWVKPMAGAGANQYTTFHLEATENPRALIKDIWENRMNVGLAIKLGTTVEYLALCTNKIDMALIMTMEP |
Parental | GFGGQKFMEDMMPKVHWLRTQFPSLDIEV-DGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSV-INLL |
GFG.QKFM.DMMPKVHWL.TQ..SLDIEV.DGGVGPDTVHK.AE.GA.M..SGSAIMRS...RSV...LL | |
Retrocopy | GFGEQKFMKDMMPKVHWLQTQLLSLDIEV<DGGVGPDTVHKGAEVGAHMTMSGSAIMRSKNYRSV<VSLL |
Parental | -RNVCSEAAQKRSL |
..NVC.EAAQK.SL | |
Retrocopy | <KNVCMEAAQKCSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 7 .35 RPM |
SRP007412_cerebellum | 0 .00 RPM | 4 .74 RPM |
SRP007412_heart | 0 .00 RPM | 2 .05 RPM |
SRP007412_kidney | 0 .00 RPM | 11 .30 RPM |
SRP007412_liver | 0 .00 RPM | 5 .14 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2620 |
Callithrix jacchus | retro_cjac_1560 |